Profile

I am a Ph.D. student in Computer Science at Seoul National University. I am interested in using deep learning methods to solve problems in the process of new drug development. Currently I am focusing on the research of compound-protein interactions.

Education

M.S. and Ph.D. in Computer Science
Seoul National University	2018 -
B.S. in Communication Engineering
University of Science Technology Beijing	2013-2017

Projects

The impact of multi-hot encoding scheme to analyze longitudinal electronic health records (EHR).
Improve reinforcement learning techniques on Atari games with advanced NEAT technology.
Ensemble learning of Compound-Protein Interaction (CPI).

Publications

A review on compound-protein interaction prediction methods: Data, format, representation and model

Sangsoo Lim*, Yijingxiu Lu*, Chang Yun Cho, Inyoung Sung, Jungwoo Kim, Youngkuk Kim, Sungjoon Park, Sun Kim

Computational and Structural Biotechnology Journal

Triangular Contrastive Learning on Molecular Graphs

MinGyu Choi, Wonseok Shin, Yijingxiu Lu, Sun Kim

MoML23: Molecular Machine Learning Conference

Enhancing Drug-Drug Interaction Prediction with Context-Aware Architecture

Yijingxiu Lu, Yinhua Piao, Sun Kim

ICLR 2024 Tiny

Improving Out-of-Distribution Generalization in Graphs via Hierarchical Semantic Environments

Yinhua Piao, Sangseon Lee, Yijingxiu Lu, Sun Kim

CVPR 2024